HL_5VYC_220

3D structure

PDB id

5VYC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the human 40S ribosomal subunit in complex with DENR-MCT-1.

Experimental method

X-RAY DIFFRACTION

Resolution

6 Å

Loop

Sequence

AGUCGCCGUGCCU

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5VYC_220 not in the Motif Atlas

Geometric match to HL_5TBW_226

Geometric discrepancy: 0.3587

The information below is about HL_5TBW_226

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_59342.2

Basepair signature

cWW-F-F-F-F-cWW-F-F

Number of instances in this motif group

5

Unit IDs

5VYC|1|i5|A|376
5VYC|1|i5|G|377
5VYC|1|i5|U|378
5VYC|1|i5|C|379
5VYC|1|i5|G|380
5VYC|1|i5|C|381
5VYC|1|i5|C|382
5VYC|1|i5|G|383
5VYC|1|i5|U|384
5VYC|1|i5|G|385
5VYC|1|i5|C|386
5VYC|1|i5|C|387
5VYC|1|i5|U|388

Current chains

Chain i5

Human 18S ribosomal RNA

Nearby chains

Chain I5

40S ribosomal protein S8

Chain L5

40S ribosomal protein S11