HL_5W4K_134

3D structure

PDB id

5W4K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with Klebsazolicin and bound to mRNA and A-, P- and E-site tRNAs at 2.7A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.7 Å

Loop

Sequence

GGAUGCAAAC

Length

10 nucleotides

Bulged bases

5W4K|1|2A|U|747, 5W4K|1|2A|A|751, 5W4K|1|2A|A|752

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5W4K_134 not in the Motif Atlas

Homologous match to HL_7RQB_023

Geometric discrepancy: 0.0536

The information below is about HL_7RQB_023

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_39334.6

Basepair signature

cWW-cWS-tSW-F-F

Number of instances in this motif group

6

Unit IDs

5W4K|1|2A|G|744
5W4K|1|2A|G|745
5W4K|1|2A|A|746
5W4K|1|2A|U|747
5W4K|1|2A|G|748
5W4K|1|2A|C|749
5W4K|1|2A|A|750
5W4K|1|2A|A|751
5W4K|1|2A|A|752
5W4K|1|2A|C|753

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 25

50S ribosomal protein L32

Chain 27

50S ribosomal protein L34

Chain 2E

50S ribosomal protein L3

Chain 2W

50S ribosomal protein L22

Chain B

Klebsazolicin