HL_5W4K_177

3D structure

PDB id

5W4K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with Klebsazolicin and bound to mRNA and A-, P- and E-site tRNAs at 2.7A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.7 Å

Loop

Sequence

CUGAAAGCAUCUAAG

Length

15 nucleotides

Bulged bases

5W4K|1|2A|G|2751, 5W4K|1|2A|C|2755

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5W4K_177 not in the Motif Atlas

Homologous match to HL_7RQB_066

Geometric discrepancy: 0.0872

The information below is about HL_7RQB_066

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_56677.7

Basepair signature

cWW-tWH-tSH-cWH-tSH-tHW-tHW-tSW

Number of instances in this motif group

8

Unit IDs

5W4K|1|2A|C|2745
5W4K|1|2A|U|2746
5W4K|1|2A|G|2747
5W4K|1|2A|A|2748
5W4K|1|2A|A|2749
5W4K|1|2A|A|2750
5W4K|1|2A|G|2751
5W4K|1|2A|C|2752
5W4K|1|2A|A|2753
5W4K|1|2A|U|2754
5W4K|1|2A|C|2755
5W4K|1|2A|U|2756
5W4K|1|2A|A|2757
5W4K|1|2A|A|2758
5W4K|1|2A|G|2759

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 29

50S ribosomal protein L36

Chain 2H

50S ribosomal protein L6

Chain 2N

50S ribosomal protein L13