HL_5WDT_011

3D structure

PDB id

5WDT (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome-EF-Tu H84A complex with GppNHp

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

ACACGUGGUAU

Length

11 nucleotides

Bulged bases

5WDT|1|A|G|386, 5WDT|1|A|G|389

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5WDT_011 not in the Motif Atlas

Homologous match to HL_5J7L_145

Geometric discrepancy: 0.0922

The information below is about HL_5J7L_145

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_91503.7

Basepair signature

cWW-F-F-F-F-F-F-F

Number of instances in this motif group

3

Unit IDs

5WDT|1|A|A|382
5WDT|1|A|C|383
5WDT|1|A|A|384
5WDT|1|A|C|385
5WDT|1|A|G|386
5WDT|1|A|U|387
5WDT|1|A|G|388
5WDT|1|A|G|389
5WDT|1|A|U|390
5WDT|1|A|A|391
5WDT|1|A|U|392

Current chains

Chain A

23S rRNA

Nearby chains

Chain X

50S ribosomal protein L28

Chain w

Transfer RNA; tRNA