HL_5WDT_081

3D structure

PDB id

5WDT (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome-EF-Tu H84A complex with GppNHp

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

AGUUAAUACCU

Length

11 nucleotides

Bulged bases

5WDT|1|a|U|467

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5WDT_081 not in the Motif Atlas

Geometric match to HL_4TUE_219

Geometric discrepancy: 0.3539

The information below is about HL_4TUE_219

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75293.5

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

11

Unit IDs

5WDT|1|a|A|461
5WDT|1|a|G|462
5WDT|1|a|U|463
5WDT|1|a|U|464
5WDT|1|a|A|465
5WDT|1|a|A|466
5WDT|1|a|U|467
5WDT|1|a|A|468
5WDT|1|a|C|469
5WDT|1|a|C|470
5WDT|1|a|U|471

Current chains

Chain a

16S rRNA

Nearby chains