HL_5WFK_005

3D structure

PDB id

5WFK (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome-EF-Tu H84A complex with GTP and near-cognate tRNA (Complex C3)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

UGAAUCCAUAG

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5WFK_005 not in the Motif Atlas

Homologous match to HL_5J7L_138

Geometric discrepancy: 0.2001

The information below is about HL_5J7L_138

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_68257.1

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

5WFK|1|A|U|158
5WFK|1|A|G|159
5WFK|1|A|A|160
5WFK|1|A|A|161
5WFK|1|A|U|162
5WFK|1|A|C|163
5WFK|1|A|C|164
5WFK|1|A|A|165
5WFK|1|A|U|166
5WFK|1|A|A|167
5WFK|1|A|G|168

Current chains

Chain A

23S rRNA

Nearby chains

Chain X

50S ribosomal protein L28