HL_5WFS_005

3D structure

PDB id

5WFS (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome-EF-Tu H84A complex with GTP and near-cognate tRNA (Complex C4)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

UGAAUCCAUAG

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5WFS_005 not in the Motif Atlas

Homologous match to HL_5J7L_138

Geometric discrepancy: 0.1975

The information below is about HL_5J7L_138

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_68257.1

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

5WFS|1|A|U|158
5WFS|1|A|G|159
5WFS|1|A|A|160
5WFS|1|A|A|161
5WFS|1|A|U|162
5WFS|1|A|C|163
5WFS|1|A|C|164
5WFS|1|A|A|165
5WFS|1|A|U|166
5WFS|1|A|A|167
5WFS|1|A|G|168

Current chains

Chain A

23S rRNA

Nearby chains

Chain X

50S ribosomal protein L28