HL_5WIT_065
3D structure
- PDB id
- 5WIT (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Thermus thermophilus 70S ribosome in complex with pikromycin and bound to mRNA and A-, P- and E-site tRNAs at 2.6A resolution
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.6 Å
Loop
- Sequence
- CUGAAAGCAUCUAAG
- Length
- 15 nucleotides
- Bulged bases
- 5WIT|1|1A|G|2764, 5WIT|1|1A|C|2768
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5WIT_065 not in the Motif Atlas
- Homologous match to HL_7RQB_066
- Geometric discrepancy: 0.0492
- The information below is about HL_7RQB_066
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_56677.7
- Basepair signature
- cWW-tWH-tSH-cWH-tSH-tHW-tHW-tSW
- Number of instances in this motif group
- 8
Unit IDs
5WIT|1|1A|C|2758
5WIT|1|1A|U|2759
5WIT|1|1A|G|2760
5WIT|1|1A|A|2761
5WIT|1|1A|A|2762
5WIT|1|1A|A|2763
5WIT|1|1A|G|2764
5WIT|1|1A|C|2765
5WIT|1|1A|A|2766
5WIT|1|1A|U|2767
5WIT|1|1A|C|2768
5WIT|1|1A|U|2769
5WIT|1|1A|A|2770
5WIT|1|1A|A|2771
5WIT|1|1A|G|2772
Current chains
- Chain 1A
- 23S Ribosomal RNA
Nearby chains
- Chain 19
- 50S ribosomal protein L36
- Chain 1H
- 50S ribosomal protein L6
- Chain 1N
- 50S ribosomal protein L13
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