HL_5WLC_011

3D structure

PDB id

5WLC (explore in PDB, NAKB, or RNA 3D Hub)

Description

The complete structure of the small subunit processome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CUUCGG

Length

6 nucleotides

Bulged bases

5WLC|1|L1|U|232

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5WLC_011 not in the Motif Atlas

Homologous match to HL_4V88_190

Geometric discrepancy: 0.5466

The information below is about HL_4V88_190

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_91015.1

Basepair signature

cWW-cWH-F

Number of instances in this motif group

4

Unit IDs

5WLC|1|L1|C|230
5WLC|1|L1|U|231
5WLC|1|L1|U|232
5WLC|1|L1|C|233
5WLC|1|L1|G|234
5WLC|1|L1|G|235

Current chains

Chain L1

18S pre-rRNA

Nearby chains

Chain SP

Utp20