3D structure

PDB id
5WT1 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Pyrococcus abyssi methyltransferase PaTrm5a bound by SAH and cognate tRNA
Experimental method
X-RAY DIFFRACTION
Resolution
2.6 Å

Loop

Sequence
CAGCCUGGGAG
Length
11 nucleotides
Bulged bases
5WT1|1|C|C|16, 5WT1|1|C|G|18, 5WT1|1|C|G|19, 5WT1|1|C|G|20
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
tRNA D-loop
Broad Annotation
No text annotation
Motif group
HL_09260.1
Basepair signature
cWW-F-F-F-F
Number of instances in this motif group
4

Unit IDs

5WT1|1|C|C|13
5WT1|1|C|A|14
5WT1|1|C|G|15
5WT1|1|C|C|16
5WT1|1|C|C|17
5WT1|1|C|U|17|||A
5WT1|1|C|G|18
5WT1|1|C|G|19
5WT1|1|C|G|20
5WT1|1|C|A|21
5WT1|1|C|G|22

Current chains

Chain C
RNA (76-MER)

Nearby chains

Chain A
tRNA (guanine(37)-N1)-methyltransferase Trm5a

Coloring options:

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