HL_5WT1_001
3D structure
- PDB id
- 5WT1 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Pyrococcus abyssi methyltransferase PaTrm5a bound by SAH and cognate tRNA
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.6 Å
Loop
- Sequence
- CAGCCUGGGAG
- Length
- 11 nucleotides
- Bulged bases
- 5WT1|1|C|C|16, 5WT1|1|C|G|18, 5WT1|1|C|G|19, 5WT1|1|C|G|20
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- tRNA D-loop
- Broad Annotation
- No text annotation
- Motif group
- HL_09260.1
- Basepair signature
- cWW-F-F-F-F
- Number of instances in this motif group
- 4
Unit IDs
5WT1|1|C|C|13
5WT1|1|C|A|14
5WT1|1|C|G|15
5WT1|1|C|C|16
5WT1|1|C|C|17
5WT1|1|C|U|17|||A
5WT1|1|C|G|18
5WT1|1|C|G|19
5WT1|1|C|G|20
5WT1|1|C|A|21
5WT1|1|C|G|22
Current chains
- Chain C
- RNA (76-MER)
Nearby chains
- Chain A
- tRNA (guanine(37)-N1)-methyltransferase Trm5a
Coloring options: