HL_5WT3_001

3D structure

PDB id

5WT3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Pyrococcus abyssi methyltransferase PaTrm5a bound by MTA and cognate tRNA

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

CAGCCUGGGAG

Length

11 nucleotides

Bulged bases

5WT3|1|C|C|16, 5WT3|1|C|G|18, 5WT3|1|C|G|19, 5WT3|1|C|G|20

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5WT3_001 not in the Motif Atlas

Homologous match to HL_5WT1_001

Geometric discrepancy: 0.0892

The information below is about HL_5WT1_001

Detailed Annotation

tRNA D-loop

Broad Annotation

No text annotation

Motif group

HL_63054.2

Basepair signature

cWW-cWS-F-F-F-F

Number of instances in this motif group

10

Unit IDs

5WT3|1|C|C|13
5WT3|1|C|A|14
5WT3|1|C|G|15
5WT3|1|C|C|16
5WT3|1|C|C|17
5WT3|1|C|U|17|||A
5WT3|1|C|G|18
5WT3|1|C|G|19
5WT3|1|C|G|20
5WT3|1|C|A|21
5WT3|1|C|G|22

Current chains

Chain C

RNA (73-MER)

Nearby chains

Chain A

tRNA (guanine(37)-N1)-methyltransferase Trm5a