HL_5WYJ_009

3D structure

PDB id

5WYJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the 90S small subunit pre-ribosome (Dhr1-depleted, Enp1-TAP, state 1)

Experimental method

ELECTRON MICROSCOPY

Resolution

8.7 Å

Loop

Sequence

GUAAAAGC

Length

8 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5WYJ_009 not in the Motif Atlas

Geometric match to HL_4PQV_003

Geometric discrepancy: 0.3401

The information below is about HL_4PQV_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_61768.1

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

3

Unit IDs

5WYJ|1|5A|G|515
5WYJ|1|5A|U|516
5WYJ|1|5A|A|517
5WYJ|1|5A|A|518
5WYJ|1|5A|A|519
5WYJ|1|5A|A|520
5WYJ|1|5A|G|521
5WYJ|1|5A|C|522

Current chains

Chain 5A

5ETS RNA

Nearby chains

Chain U3

Utp20