HL_5WYJ_017

3D structure

PDB id

5WYJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the 90S small subunit pre-ribosome (Dhr1-depleted, Enp1-TAP, state 1)

Experimental method

ELECTRON MICROSCOPY

Resolution

8.7 Å

Loop

Sequence

CCUGAGAAACGG

Length

12 nucleotides

Bulged bases

5WYJ|1|SA|A|400, 5WYJ|1|SA|C|402, 5WYJ|1|SA|G|403

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5WYJ_017 not in the Motif Atlas

Homologous match to HL_4V88_195

Geometric discrepancy: 0.5676

The information below is about HL_4V88_195

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_06226.1

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

5

Unit IDs

5WYJ|1|SA|C|393
5WYJ|1|SA|C|394
5WYJ|1|SA|U|395
5WYJ|1|SA|G|396
5WYJ|1|SA|A|397
5WYJ|1|SA|G|398
5WYJ|1|SA|A|399
5WYJ|1|SA|A|400
5WYJ|1|SA|A|401
5WYJ|1|SA|C|402
5WYJ|1|SA|G|403
5WYJ|1|SA|G|404

Current chains

Chain SA

18S ribosomal RNA

Nearby chains

Chain E4

Enp2

Chain SH

40S ribosomal protein S6-A

Chain SJ

40S ribosomal protein S8-A