HL_5WYJ_024

3D structure

PDB id

5WYJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the 90S small subunit pre-ribosome (Dhr1-depleted, Enp1-TAP, state 1)

Experimental method

ELECTRON MICROSCOPY

Resolution

8.7 Å

Loop

Sequence

AGGUGAAAUU

Length

10 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5WYJ_024 not in the Motif Atlas

Homologous match to HL_4V88_206

Geometric discrepancy: 0.3448

The information below is about HL_4V88_206

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75293.2

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

14

Unit IDs

5WYJ|1|SA|A|900
5WYJ|1|SA|G|901
5WYJ|1|SA|G|902
5WYJ|1|SA|U|903
5WYJ|1|SA|G|904
5WYJ|1|SA|A|905
5WYJ|1|SA|A|906
5WYJ|1|SA|A|907
5WYJ|1|SA|U|908
5WYJ|1|SA|U|909

Current chains

Chain SA

18S ribosomal RNA

Nearby chains

Chain BC

U3 small nucleolar RNA-associated protein 13

Chain K1

KRR1 small subunit processome component

Chain SP

40S ribosomal protein S14-A