HL_5WYJ_028

3D structure

PDB id

5WYJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the 90S small subunit pre-ribosome (Dhr1-depleted, Enp1-TAP, state 1)

Experimental method

ELECTRON MICROSCOPY

Resolution

8.7 Å

Loop

Sequence

CGAGAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5WYJ_028 not in the Motif Atlas

Homologous match to HL_4V88_218

Geometric discrepancy: 0.3015

The information below is about HL_4V88_218

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

5WYJ|1|SA|C|1501
5WYJ|1|SA|G|1502
5WYJ|1|SA|A|1503
5WYJ|1|SA|G|1504
5WYJ|1|SA|A|1505
5WYJ|1|SA|G|1506

Current chains

Chain SA

18S ribosomal RNA

Nearby chains

Chain U5

Ribosome biogenesis protein UTP30

Chain UC

Unassigned helices