HL_5WYJ_031

3D structure

PDB id

5WYJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the 90S small subunit pre-ribosome (Dhr1-depleted, Enp1-TAP, state 1)

Experimental method

ELECTRON MICROSCOPY

Resolution

8.7 Å

Loop

Sequence

AGAAAU

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5WYJ_031 not in the Motif Atlas

Geometric match to HL_5J7L_179

Geometric discrepancy: 0.3385

The information below is about HL_5J7L_179

Detailed Annotation

GNRA related

Broad Annotation

GNRA related

Motif group

HL_04783.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

9

Unit IDs

5WYJ|1|SA|A|1802
5WYJ|1|SA|G|1803
5WYJ|1|SA|A|1804
5WYJ|1|SA|A|1805
5WYJ|1|SA|A|1806
5WYJ|1|SA|U|1807

Current chains

Chain SA

18S ribosomal RNA

Nearby chains

Chain BC

U3 small nucleolar RNA-associated protein 13