HL_5WYK_008

3D structure

PDB id

5WYK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the 90S small subunit pre-ribosome (Mtr4-depleted, Enp1-TAP)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.5 Å

Loop

Sequence

CACCGGG

Length

7 nucleotides

Bulged bases

5WYK|1|5A|A|419

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5WYK_008 not in the Motif Atlas

Geometric match to HL_2Y8W_001

Geometric discrepancy: 0.2924

The information below is about HL_2Y8W_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_81100.2

Basepair signature

cWW

Number of instances in this motif group

3

Unit IDs

5WYK|1|5A|C|418
5WYK|1|5A|A|419
5WYK|1|5A|C|432
5WYK|1|5A|C|433
5WYK|1|5A|G|434
5WYK|1|5A|G|435
5WYK|1|5A|G|436

Current chains

Chain 5A

5ETS RNA

Nearby chains

Chain UC

Unassigned helices