HL_5WYK_009

3D structure

PDB id

5WYK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the 90S small subunit pre-ribosome (Mtr4-depleted, Enp1-TAP)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.5 Å

Loop

Sequence

GUAAAAGC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5WYK_009 not in the Motif Atlas

Geometric match to HL_4PQV_003

Geometric discrepancy: 0.3248

The information below is about HL_4PQV_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_97917.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

3

Unit IDs

5WYK|1|5A|G|515
5WYK|1|5A|U|516
5WYK|1|5A|A|517
5WYK|1|5A|A|518
5WYK|1|5A|A|519
5WYK|1|5A|A|520
5WYK|1|5A|G|521
5WYK|1|5A|C|522

Current chains

Chain 5A

5ETS RNA

Nearby chains