HL_5WYK_019

3D structure

PDB id

5WYK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the 90S small subunit pre-ribosome (Mtr4-depleted, Enp1-TAP)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.5 Å

Loop

Sequence

UAAUUCA

Length

7 nucleotides

Bulged bases

5WYK|1|SA|A|452, 5WYK|1|SA|U|454, 5WYK|1|SA|C|455

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5WYK_019 not in the Motif Atlas

Homologous match to HL_4V88_197

Geometric discrepancy: 0.5982

The information below is about HL_4V88_197

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_80922.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

4

Unit IDs

5WYK|1|SA|U|450
5WYK|1|SA|A|451
5WYK|1|SA|A|452
5WYK|1|SA|U|453
5WYK|1|SA|U|454
5WYK|1|SA|C|455
5WYK|1|SA|A|456

Current chains

Chain SA

18S ribosomal RNA

Nearby chains

Chain SF

40S ribosomal protein S4-A

Chain SZ

40S ribosomal protein S24-A