HL_5WYK_022

3D structure

PDB id

5WYK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the 90S small subunit pre-ribosome (Mtr4-depleted, Enp1-TAP)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.5 Å

Loop

Sequence

CAGCCG

Length

6 nucleotides

Bulged bases

5WYK|1|SA|G|571

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5WYK_022 not in the Motif Atlas

Geometric match to HL_8C3A_022

Geometric discrepancy: 0.3643

The information below is about HL_8C3A_022

Detailed Annotation

Externally structured

Broad Annotation

Externally structured

Motif group

HL_96426.1

Basepair signature

cWW-F

Number of instances in this motif group

4

Unit IDs

5WYK|1|SA|C|569
5WYK|1|SA|A|570
5WYK|1|SA|G|571
5WYK|1|SA|C|572
5WYK|1|SA|C|573
5WYK|1|SA|G|574

Current chains

Chain SA

18S ribosomal RNA

Nearby chains

Chain B1

Ribosome biogenesis protein BMS1

Chain MB

U3 small nucleolar ribonucleoprotein protein IMP4

Chain U2

Utp11

Chain UC

Unassigned helices