HL_5WYK_031
3D structure
- PDB id
- 5WYK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the 90S small subunit pre-ribosome (Mtr4-depleted, Enp1-TAP)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.5 Å
Loop
- Sequence
- AGAAAU
- Length
- 6 nucleotides
- Bulged bases
- 5WYK|1|SA|A|1804
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5WYK_031 not in the Motif Atlas
- Geometric match to HL_5J7L_180
- Geometric discrepancy: 0.3852
- The information below is about HL_5J7L_180
- Detailed Annotation
- GNRA variation
- Broad Annotation
- GNRA variation
- Motif group
- HL_37824.7
- Basepair signature
- cWW-F-F-F-F
- Number of instances in this motif group
- 349
Unit IDs
5WYK|1|SA|A|1802
5WYK|1|SA|G|1803
5WYK|1|SA|A|1804
5WYK|1|SA|A|1805
5WYK|1|SA|A|1806
5WYK|1|SA|U|1807
Current chains
- Chain SA
- 18S ribosomal RNA
Nearby chains
- Chain BC
- U3 small nucleolar RNA-associated protein 13
Coloring options: