HL_5XYM_040

3D structure

PDB id

5XYM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Large subunit of Mycobacterium smegmatis

Experimental method

ELECTRON MICROSCOPY

Resolution

3.08 Å

Loop

Sequence

AGAGAAU

Length

7 nucleotides

Bulged bases

5XYM|1|A|A|1855

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5XYM_040 not in the Motif Atlas

Homologous match to HL_5J7L_174

Geometric discrepancy: 0.1401

The information below is about HL_5J7L_174

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.8

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

352

Unit IDs

5XYM|1|A|A|1851
5XYM|1|A|G|1852
5XYM|1|A|A|1853
5XYM|1|A|G|1854
5XYM|1|A|A|1855
5XYM|1|A|A|1856
5XYM|1|A|U|1857

Current chains

Chain A

23S RNA

Nearby chains