HL_5XYM_044
3D structure
- PDB id
- 5XYM (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Large subunit of Mycobacterium smegmatis
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.08 Å
Loop
- Sequence
- UUUACUAAAAA
- Length
- 11 nucleotides
- Bulged bases
- 5XYM|1|A|A|2000, 5XYM|1|A|C|2001, 5XYM|1|A|U|2002, 5XYM|1|A|A|2006
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5XYM_044 not in the Motif Atlas
- Homologous match to HL_4WF9_043
- Geometric discrepancy: 0.1223
- The information below is about HL_4WF9_043
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_87681.1
- Basepair signature
- cWW-cWW-tWH-F-tWH-F-F-F-F-F
- Number of instances in this motif group
- 9
Unit IDs
5XYM|1|A|U|1997
5XYM|1|A|U|1998
5XYM|1|A|U|1999
5XYM|1|A|A|2000
5XYM|1|A|C|2001
5XYM|1|A|U|2002
5XYM|1|A|A|2003
5XYM|1|A|A|2004
5XYM|1|A|A|2005
5XYM|1|A|A|2006
5XYM|1|A|A|2007
Current chains
- Chain A
- 23S RNA
Nearby chains
- Chain 2
- 50S ribosomal protein L34
- Chain C
- 50S ribosomal protein L2
Coloring options: