HL_5XYM_065

3D structure

PDB id

5XYM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Large subunit of Mycobacterium smegmatis

Experimental method

ELECTRON MICROSCOPY

Resolution

3.08 Å

Loop

Sequence

CUGAAAGCAUCUAAG

Length

15 nucleotides

Bulged bases

5XYM|1|A|G|2978, 5XYM|1|A|C|2982

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5XYM_065 not in the Motif Atlas

Homologous match to HL_7RQB_066

Geometric discrepancy: 0.1276

The information below is about HL_7RQB_066

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_56677.7

Basepair signature

cWW-tWH-tSH-cWH-tSH-tHW-tHW-tSW

Number of instances in this motif group

8

Unit IDs

5XYM|1|A|C|2972
5XYM|1|A|U|2973
5XYM|1|A|G|2974
5XYM|1|A|A|2975
5XYM|1|A|A|2976
5XYM|1|A|A|2977
5XYM|1|A|G|2978
5XYM|1|A|C|2979
5XYM|1|A|A|2980
5XYM|1|A|U|2981
5XYM|1|A|C|2982
5XYM|1|A|U|2983
5XYM|1|A|A|2984
5XYM|1|A|A|2985
5XYM|1|A|G|2986

Current chains

Chain A

23S RNA

Nearby chains

Chain 4

50S ribosomal protein L36

Chain G

50S ribosomal protein L6