HL_5XYM_071

3D structure

PDB id

5XYM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Large subunit of Mycobacterium smegmatis

Experimental method

ELECTRON MICROSCOPY

Resolution

3.08 Å

Loop

Sequence

GGGUAAGACC

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5XYM_071 not in the Motif Atlas

Geometric match to HL_4TUE_219

Geometric discrepancy: 0.339

The information below is about HL_4TUE_219

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75293.5

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

11

Unit IDs

5XYM|1|A|G|829
5XYM|1|A|G|830
5XYM|1|A|G|831
5XYM|1|A|U|832
5XYM|1|A|A|833
5XYM|1|A|A|834
5XYM|1|A|G|835
5XYM|1|A|A|836
5XYM|1|A|C|837
5XYM|1|A|C|838

Current chains

Chain A

23S RNA

Nearby chains

Chain C

50S ribosomal protein L2