HL_5XYU_015

3D structure

PDB id

5XYU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Small subunit of Mycobacterium smegmatis ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.45 Å

Loop

Sequence

CGGUGGAAUG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5XYU_015 not in the Motif Atlas

Homologous match to HL_4LFB_015

Geometric discrepancy: 0.1263

The information below is about HL_4LFB_015

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_38491.2

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

12

Unit IDs

5XYU|1|A|C|669
5XYU|1|A|G|670
5XYU|1|A|G|671
5XYU|1|A|U|672
5XYU|1|A|G|673
5XYU|1|A|G|674
5XYU|1|A|A|675
5XYU|1|A|A|676
5XYU|1|A|U|677
5XYU|1|A|G|678

Current chains

Chain A

16S RNA

Nearby chains

Chain G

30S ribosomal protein S7

Chain K

30S ribosomal protein S11