HL_5XYU_017

3D structure

PDB id

5XYU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Small subunit of Mycobacterium smegmatis ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.45 Å

Loop

Sequence

GAUUAGAUACC

Length

11 nucleotides

Bulged bases

5XYU|1|A|U|773

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5XYU_017 not in the Motif Atlas

Homologous match to HL_5J7L_017

Geometric discrepancy: 0.1225

The information below is about HL_5J7L_017

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75293.5

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

11

Unit IDs

5XYU|1|A|G|766
5XYU|1|A|A|767
5XYU|1|A|U|768
5XYU|1|A|U|769
5XYU|1|A|A|770
5XYU|1|A|G|771
5XYU|1|A|A|772
5XYU|1|A|U|773
5XYU|1|A|A|774
5XYU|1|A|C|775
5XYU|1|A|C|776

Current chains

Chain A

16S RNA

Nearby chains

Chain K

30S ribosomal protein S11