HL_5Z3G_007
3D structure
- PDB id
- 5Z3G (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of a nucleolar pre-60S ribosome (Rpf1-TAP)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.65 Å
Loop
- Sequence
- GUGAGAAUC
- Length
- 9 nucleotides
- Bulged bases
- 5Z3G|1|A|G|218, 5Z3G|1|A|A|219, 5Z3G|1|A|G|220
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5Z3G_007 not in the Motif Atlas
- Homologous match to HL_8C3A_007
- Geometric discrepancy: 0.1519
- The information below is about HL_8C3A_007
- Detailed Annotation
- T-loop with unstacked turn
- Broad Annotation
- T-loop
- Motif group
- HL_08002.12
- Basepair signature
- cWW-cWW-F-tWH
- Number of instances in this motif group
- 16
Unit IDs
5Z3G|1|A|G|216
5Z3G|1|A|U|217
5Z3G|1|A|G|218
5Z3G|1|A|A|219
5Z3G|1|A|G|220
5Z3G|1|A|A|221
5Z3G|1|A|A|222
5Z3G|1|A|U|223
5Z3G|1|A|C|224
Current chains
- Chain A
- 25S rRNA
Nearby chains
- Chain B
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain G
- 60S ribosomal protein L4-A
- Chain O
- Ribosome production factor 1
- Chain Z
- Protein MAK16
- Chain c
- 60S ribosomal protein L26-A
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