HL_5Z3G_008

3D structure

PDB id

5Z3G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a nucleolar pre-60S ribosome (Rpf1-TAP)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.65 Å

Loop

Sequence

UUUGGGAAUG

Length

10 nucleotides

Bulged bases

5Z3G|1|A|A|285

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5Z3G_008 not in the Motif Atlas

Homologous match to HL_8P9A_120

Geometric discrepancy: 0.4417

The information below is about HL_8P9A_120

Detailed Annotation

T-loop related

Broad Annotation

T-loop

Motif group

HL_77436.5

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

23

Unit IDs

5Z3G|1|A|U|278
5Z3G|1|A|U|279
5Z3G|1|A|U|280
5Z3G|1|A|G|281
5Z3G|1|A|G|282
5Z3G|1|A|G|283
5Z3G|1|A|A|284
5Z3G|1|A|A|285
5Z3G|1|A|U|286
5Z3G|1|A|G|287

Current chains

Chain A

25S rRNA

Nearby chains

Chain R

60S ribosomal protein L15-A

Chain a

Ribosome biogenesis protein BRX1