HL_5Z3G_012

3D structure

PDB id

5Z3G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a nucleolar pre-60S ribosome (Rpf1-TAP)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.65 Å

Loop

Sequence

CCUCGG

Length

6 nucleotides

Bulged bases

5Z3G|1|A|U|545, 5Z3G|1|A|C|546

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5Z3G_012 not in the Motif Atlas

Homologous match to HL_5TBW_012

Geometric discrepancy: 0.4898

The information below is about HL_5TBW_012

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_13963.1

Basepair signature

cWW-F-F

Number of instances in this motif group

7

Unit IDs

5Z3G|1|A|C|543
5Z3G|1|A|C|544
5Z3G|1|A|U|545
5Z3G|1|A|C|546
5Z3G|1|A|G|547
5Z3G|1|A|G|548

Current chains

Chain A

25S rRNA

Nearby chains

Chain L

60S ribosomal protein L9-A