HL_5Z3G_029

3D structure

PDB id

5Z3G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a nucleolar pre-60S ribosome (Rpf1-TAP)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.65 Å

Loop

Sequence

CUUG

Length

4 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5Z3G_029 not in the Motif Atlas

Geometric match to HL_6U8D_003

Geometric discrepancy: 0.2435

The information below is about HL_6U8D_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_32346.4

Basepair signature

cWW-F

Number of instances in this motif group

9

Unit IDs

5Z3G|1|A|C|3194
5Z3G|1|A|U|3195
5Z3G|1|A|U|3196
5Z3G|1|A|G|3197

Current chains

Chain A

25S rRNA

Nearby chains

Chain L

60S ribosomal protein L9-A

Chain Q

60S ribosomal protein L14-A