HL_5Z3G_032
3D structure
- PDB id
- 5Z3G (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of a nucleolar pre-60S ribosome (Rpf1-TAP)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.65 Å
Loop
- Sequence
- CAGCGAAAUG
- Length
- 10 nucleotides
- Bulged bases
- 5Z3G|1|B|A|48
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5Z3G_032 not in the Motif Atlas
- Geometric match to HL_6JXM_002
- Geometric discrepancy: 0.1659
- The information below is about HL_6JXM_002
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_31585.4
- Basepair signature
- cWW-F-F-F-F-F
- Number of instances in this motif group
- 20
Unit IDs
5Z3G|1|B|C|47
5Z3G|1|B|A|48
5Z3G|1|B|G|49
5Z3G|1|B|C|50
5Z3G|1|B|G|51
5Z3G|1|B|A|52
5Z3G|1|B|A|53
5Z3G|1|B|A|54
5Z3G|1|B|U|55
5Z3G|1|B|G|56
Current chains
- Chain B
- 5.8S rRNA
Nearby chains
- Chain A
- Large subunit ribosomal RNA; LSU rRNA
- Chain d
- Unassigned
- Chain l
- 60S ribosomal protein L35-A
- Chain n
- 60S ribosomal protein L37-A
Coloring options: