HL_5Z3G_033
3D structure
- PDB id
- 5Z3G (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of a nucleolar pre-60S ribosome (Rpf1-TAP)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.65 Å
Loop
- Sequence
- UGAAUUGCAGAAUUCCGUGAA
- Length
- 21 nucleotides
- Bulged bases
- 5Z3G|1|B|U|82, 5Z3G|1|B|C|84, 5Z3G|1|B|U|86
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5Z3G_033 not in the Motif Atlas
- Homologous match to HL_8C3A_230
- Geometric discrepancy: 0.3536
- The information below is about HL_8C3A_230
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_08513.2
- Basepair signature
- cWW-tSH-tSS-tHS-F-F-F-F-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 3
Unit IDs
5Z3G|1|B|U|69
5Z3G|1|B|G|70
5Z3G|1|B|A|71
5Z3G|1|B|A|72
5Z3G|1|B|U|73
5Z3G|1|B|U|74
5Z3G|1|B|G|75
5Z3G|1|B|C|76
5Z3G|1|B|A|77
5Z3G|1|B|G|78
5Z3G|1|B|A|79
5Z3G|1|B|A|80
5Z3G|1|B|U|81
5Z3G|1|B|U|82
5Z3G|1|B|C|83
5Z3G|1|B|C|84
5Z3G|1|B|G|85
5Z3G|1|B|U|86
5Z3G|1|B|G|87
5Z3G|1|B|A|88
5Z3G|1|B|A|89
Current chains
- Chain B
- 5.8S rRNA
Nearby chains
- Chain A
- Large subunit ribosomal RNA; LSU rRNA
- Chain c
- 60S ribosomal protein L26-A
- Chain l
- 60S ribosomal protein L35-A
- Chain n
- 60S ribosomal protein L37-A
Coloring options: