HL_5Z3G_034

3D structure

PDB id

5Z3G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a nucleolar pre-60S ribosome (Rpf1-TAP)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.65 Å

Loop

Sequence

CACAUUG

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5Z3G_034 not in the Motif Atlas

Geometric match to HL_8C3A_022

Geometric discrepancy: 0.2555

The information below is about HL_8C3A_022

Detailed Annotation

Externally structured

Broad Annotation

Externally structured

Motif group

HL_96426.1

Basepair signature

cWW-F

Number of instances in this motif group

4

Unit IDs

5Z3G|1|B|C|108
5Z3G|1|B|A|109
5Z3G|1|B|C|110
5Z3G|1|B|A|111
5Z3G|1|B|U|112
5Z3G|1|B|U|113
5Z3G|1|B|G|114

Current chains

Chain B

5.8S rRNA

Nearby chains

Chain M

Nucleolar protein 7

Chain n

60S ribosomal protein L37-A