HL_5Z3G_035

3D structure

PDB id

5Z3G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a nucleolar pre-60S ribosome (Rpf1-TAP)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.65 Å

Loop

Sequence

GUAUUC

Length

6 nucleotides

Bulged bases

5Z3G|1|B|U|127, 5Z3G|1|B|U|128

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5Z3G_035 not in the Motif Atlas

Geometric match to HL_2Y8W_001

Geometric discrepancy: 0.1857

The information below is about HL_2Y8W_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_81100.2

Basepair signature

cWW

Number of instances in this motif group

3

Unit IDs

5Z3G|1|B|G|124
5Z3G|1|B|U|125
5Z3G|1|B|A|126
5Z3G|1|B|U|127
5Z3G|1|B|U|128
5Z3G|1|B|C|129

Current chains

Chain B

5.8S rRNA

Nearby chains

Chain M

Nucleolar protein 7