HL_5Z3G_039

3D structure

PDB id

5Z3G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a nucleolar pre-60S ribosome (Rpf1-TAP)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.65 Å

Loop

Sequence

UGAUCA

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5Z3G_039 not in the Motif Atlas

Homologous match to HL_8P9A_177

Geometric discrepancy: 0.4186

The information below is about HL_8P9A_177

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_12125.1

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

12

Unit IDs

5Z3G|1|A|U|3068
5Z3G|1|A|G|3069
5Z3G|1|A|A|3070
5Z3G|1|A|U|3071
5Z3G|1|A|C|3072
5Z3G|1|A|A|3073

Current chains

Chain A

25S rRNA

Nearby chains