HL_5ZEB_069

3D structure

PDB id

5ZEB (explore in PDB, NAKB, or RNA 3D Hub)

Description

M. Smegmatis P/P state 70S ribosome structure

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CUGAAAGCAUCUAAG

Length

15 nucleotides

Bulged bases

5ZEB|1|A|G|2975, 5ZEB|1|A|C|2979

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5ZEB_069 not in the Motif Atlas

Homologous match to HL_7RQB_066

Geometric discrepancy: 0.1238

The information below is about HL_7RQB_066

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_56677.7

Basepair signature

cWW-tWH-tSH-cWH-tSH-tHW-tHW-tSW

Number of instances in this motif group

8

Unit IDs

5ZEB|1|A|C|2969
5ZEB|1|A|U|2970
5ZEB|1|A|G|2971
5ZEB|1|A|A|2972
5ZEB|1|A|A|2973
5ZEB|1|A|A|2974
5ZEB|1|A|G|2975
5ZEB|1|A|C|2976
5ZEB|1|A|A|2977
5ZEB|1|A|U|2978
5ZEB|1|A|C|2979
5ZEB|1|A|U|2980
5ZEB|1|A|A|2981
5ZEB|1|A|A|2982
5ZEB|1|A|G|2983

Current chains

Chain A

23S rRNA

Nearby chains

Chain 7

50S ribosomal protein L36

Chain G

50S ribosomal protein L6