HL_5ZEP_069

3D structure

PDB id

5ZEP (explore in PDB, NAKB, or RNA 3D Hub)

Description

M. smegmatis hibernating state 70S ribosome structure

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CUGAAAGCAUCUAAG

Length

15 nucleotides

Bulged bases

5ZEP|1|A|G|2975, 5ZEP|1|A|C|2979

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5ZEP_069 not in the Motif Atlas

Homologous match to HL_7RQB_066

Geometric discrepancy: 0.1238

The information below is about HL_7RQB_066

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_56677.7

Basepair signature

cWW-tWH-tSH-cWH-tSH-tHW-tHW-tSW

Number of instances in this motif group

8

Unit IDs

5ZEP|1|A|C|2969
5ZEP|1|A|U|2970
5ZEP|1|A|G|2971
5ZEP|1|A|A|2972
5ZEP|1|A|A|2973
5ZEP|1|A|A|2974
5ZEP|1|A|G|2975
5ZEP|1|A|C|2976
5ZEP|1|A|A|2977
5ZEP|1|A|U|2978
5ZEP|1|A|C|2979
5ZEP|1|A|U|2980
5ZEP|1|A|A|2981
5ZEP|1|A|A|2982
5ZEP|1|A|G|2983

Current chains

Chain A

23S rRNA

Nearby chains

Chain 4

50S ribosomal protein L36

Chain G

50S ribosomal protein L6