HL_5ZLU_001

3D structure

PDB id

5ZLU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Ribosome Structure bound to ABC-F protein.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CAGCCCGGUAG

Length

11 nucleotides

Bulged bases

5ZLU|1|DD|C|16, 5ZLU|1|DD|G|19, 5ZLU|1|DD|G|20, 5ZLU|1|DD|U|21

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5ZLU_001 not in the Motif Atlas

Homologous match to HL_7YSE_001

Geometric discrepancy: 0.1756

The information below is about HL_7YSE_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5ZLU|1|DD|C|13
5ZLU|1|DD|A|14
5ZLU|1|DD|G|15
5ZLU|1|DD|C|16
5ZLU|1|DD|C|17
5ZLU|1|DD|C|18
5ZLU|1|DD|G|19
5ZLU|1|DD|G|20
5ZLU|1|DD|U|21
5ZLU|1|DD|A|22
5ZLU|1|DD|G|23

Current chains

Chain DD

P-site tRNA

Nearby chains

Chain EE

Macrolide efflux protein

Chain V

Large subunit ribosomal RNA; LSU rRNA