HL_5ZLU_028

3D structure

PDB id

5ZLU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Ribosome Structure bound to ABC-F protein.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GUUAAGUC

Length

8 nucleotides

Bulged bases

5ZLU|1|G|A|1092, 5ZLU|1|G|G|1094

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5ZLU_028 not in the Motif Atlas

Homologous match to HL_4LFB_025

Geometric discrepancy: 0.3235

The information below is about HL_4LFB_025

Detailed Annotation

T-loop related

Broad Annotation

T-loop

Motif group

HL_77436.5

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

23

Unit IDs

5ZLU|1|G|G|1089
5ZLU|1|G|U|1090
5ZLU|1|G|U|1091
5ZLU|1|G|A|1092
5ZLU|1|G|A|1093
5ZLU|1|G|G|1094
5ZLU|1|G|U|1095
5ZLU|1|G|C|1096

Current chains

Chain G

16S ribosomal RNA

Nearby chains

Chain H

30S ribosomal protein S2

Chain M

30S ribosomal protein S7