HL_5ZLU_055

3D structure

PDB id

5ZLU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Ribosome Structure bound to ABC-F protein.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CCGAACAGG

Length

9 nucleotides

Bulged bases

5ZLU|1|V|G|642, 5ZLU|1|V|A|643

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5ZLU_055 not in the Motif Atlas

Geometric match to HL_8C3A_039

Geometric discrepancy: 0.3897

The information below is about HL_8C3A_039

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_71121.1

Basepair signature

cWW-F

Number of instances in this motif group

24

Unit IDs

5ZLU|1|V|C|640
5ZLU|1|V|C|641
5ZLU|1|V|G|642
5ZLU|1|V|A|643
5ZLU|1|V|A|644
5ZLU|1|V|C|645
5ZLU|1|V|A|646
5ZLU|1|V|G|647
5ZLU|1|V|G|648

Current chains

Chain V

23S ribosomal RNA

Nearby chains

Chain AA

50S ribosomal protein L35

Chain y

50S ribosomal protein L33