HL_5ZLU_067

3D structure

PDB id

5ZLU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Ribosome Structure bound to ABC-F protein.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GUGAGAAUC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5ZLU_067 not in the Motif Atlas

Homologous match to HL_7A0S_032

Geometric discrepancy: 0.268

The information below is about HL_7A0S_032

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_33597.2

Basepair signature

cWW-tWH-F-F-F-F-F

Number of instances in this motif group

135

Unit IDs

5ZLU|1|V|G|1281
5ZLU|1|V|U|1282
5ZLU|1|V|G|1283
5ZLU|1|V|A|1284
5ZLU|1|V|G|1285
5ZLU|1|V|A|1286
5ZLU|1|V|A|1287
5ZLU|1|V|U|1288
5ZLU|1|V|C|1289

Current chains

Chain V

23S ribosomal RNA

Nearby chains

Chain k

50S ribosomal protein L17

Chain p

50S ribosomal protein L22