HL_5ZLU_080

3D structure

PDB id

5ZLU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Ribosome Structure bound to ABC-F protein.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GUGCAAGC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5ZLU_080 not in the Motif Atlas

Geometric match to HL_7A0S_056

Geometric discrepancy: 0.3543

The information below is about HL_7A0S_056

Detailed Annotation

GNRA with extra cWW

Broad Annotation

GNRA with extra cWW

Motif group

HL_87268.1

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

16

Unit IDs

5ZLU|1|V|G|1863
5ZLU|1|V|U|1864
5ZLU|1|V|G|1869
5ZLU|1|V|C|1870
5ZLU|1|V|A|1871
5ZLU|1|V|A|1872
5ZLU|1|V|G|1878
5ZLU|1|V|C|1879

Current chains

Chain V

23S ribosomal RNA

Nearby chains

Chain Y

50S ribosomal protein L1