HL_5ZLU_083

3D structure

PDB id

5ZLU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Ribosome Structure bound to ABC-F protein.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GUGAAGAUGC

Length

10 nucleotides

Bulged bases

5ZLU|1|V|A|2030, 5ZLU|1|V|A|2031, 5ZLU|1|V|G|2032, 5ZLU|1|V|U|2034, 5ZLU|1|V|G|2035

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5ZLU_083 not in the Motif Atlas

Homologous match to HL_7RQB_050

Geometric discrepancy: 0.2208

The information below is about HL_7RQB_050

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_90642.6

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

6

Unit IDs

5ZLU|1|V|G|2027
5ZLU|1|V|U|2028
5ZLU|1|V|G|2029
5ZLU|1|V|A|2030
5ZLU|1|V|A|2031
5ZLU|1|V|G|2032
5ZLU|1|V|A|2033
5ZLU|1|V|U|2034
5ZLU|1|V|G|2035
5ZLU|1|V|C|2036

Current chains

Chain V

23S ribosomal RNA

Nearby chains

Chain a

50S ribosomal protein L3

Chain x

50S ribosomal protein L32