HL_5ZLU_087

3D structure

PDB id

5ZLU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Ribosome Structure bound to ABC-F protein.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CUAAAAGGUAACG

Length

13 nucleotides

Bulged bases

5ZLU|1|V|A|2268, 5ZLU|1|V|C|2275

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5ZLU_087 not in the Motif Atlas

Homologous match to HL_7A0S_053

Geometric discrepancy: 0.309

The information below is about HL_7A0S_053

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_91939.2

Basepair signature

cWW-tSH-tHH-tWW-F-F-F

Number of instances in this motif group

8

Unit IDs

5ZLU|1|V|C|2264
5ZLU|1|V|U|2265
5ZLU|1|V|A|2266
5ZLU|1|V|A|2267
5ZLU|1|V|A|2268
5ZLU|1|V|A|2269
5ZLU|1|V|G|2270
5ZLU|1|V|G|2271
5ZLU|1|V|U|2272
5ZLU|1|V|A|2273
5ZLU|1|V|A|2274
5ZLU|1|V|C|2275
5ZLU|1|V|G|2276

Current chains

Chain V

23S ribosomal RNA

Nearby chains

Chain j

50S ribosomal protein L16

Chain t

50S ribosomal protein L27