HL_5ZLU_094

3D structure

PDB id

5ZLU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Ribosome Structure bound to ABC-F protein.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

UGAAGAAG

Length

8 nucleotides

Bulged bases

5ZLU|1|V|G|2529

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5ZLU_094 not in the Motif Atlas

Homologous match to HL_5J7L_194

Geometric discrepancy: 0.2132

The information below is about HL_5J7L_194

Detailed Annotation

GNRA variation

Broad Annotation

GNRA variation

Motif group

HL_31585.4

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

20

Unit IDs

5ZLU|1|V|U|2528
5ZLU|1|V|G|2529
5ZLU|1|V|A|2530
5ZLU|1|V|A|2531
5ZLU|1|V|G|2532
5ZLU|1|V|A|2533
5ZLU|1|V|A|2534
5ZLU|1|V|G|2535

Current chains

Chain V

23S ribosomal RNA

Nearby chains

Chain BB

50S ribosomal protein L36

Chain d

50S ribosomal protein L6