HL_5ZLU_114

3D structure

PDB id

5ZLU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Ribosome Structure bound to ABC-F protein.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

UUGGGAAG

Length

8 nucleotides

Bulged bases

5ZLU|1|V|A|311

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5ZLU_114 not in the Motif Atlas

Homologous match to HL_7A0S_010

Geometric discrepancy: 0.1977

The information below is about HL_7A0S_010

Detailed Annotation

T-loop with 1 bulged base

Broad Annotation

T-loop

Motif group

HL_01609.3

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

18

Unit IDs

5ZLU|1|V|U|305
5ZLU|1|V|U|306
5ZLU|1|V|G|307
5ZLU|1|V|G|308
5ZLU|1|V|G|309
5ZLU|1|V|A|310
5ZLU|1|V|A|311
5ZLU|1|V|G|312

Current chains

Chain V

23S ribosomal RNA

Nearby chains

Chain r

50S ribosomal protein L24