HL_5ZLU_117

3D structure

PDB id

5ZLU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Ribosome Structure bound to ABC-F protein.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

UGGGGGAUGACCCCA

Length

15 nucleotides

Bulged bases

5ZLU|1|V|A|1174

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5ZLU_117 not in the Motif Atlas

Geometric match to HL_5TBW_226

Geometric discrepancy: 0.3595

The information below is about HL_5TBW_226

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_59342.2

Basepair signature

cWW-F-F-F-F-cWW-F-F

Number of instances in this motif group

5

Unit IDs

5ZLU|1|V|U|1167
5ZLU|1|V|G|1168
5ZLU|1|V|G|1169
5ZLU|1|V|G|1170
5ZLU|1|V|G|1171
5ZLU|1|V|G|1173
5ZLU|1|V|A|1174
5ZLU|1|V|U|1175
5ZLU|1|V|G|1176
5ZLU|1|V|A|1177
5ZLU|1|V|C|1178
5ZLU|1|V|C|1179
5ZLU|1|V|C|1180
5ZLU|1|V|C|1181
5ZLU|1|V|A|1182

Current chains

Chain V

23S ribosomal RNA

Nearby chains

Chain o

50S ribosomal protein L21

Chain v

50S ribosomal protein L30