HL_5ZLU_128

3D structure

PDB id

5ZLU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Ribosome Structure bound to ABC-F protein.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GCCUGCAAGC

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5ZLU_128 not in the Motif Atlas

Geometric match to HL_5J7L_212

Geometric discrepancy: 0.393

The information below is about HL_5J7L_212

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75293.5

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

11

Unit IDs

5ZLU|1|V|G|2354
5ZLU|1|V|C|2355
5ZLU|1|V|C|2356
5ZLU|1|V|U|2357
5ZLU|1|V|G|2358
5ZLU|1|V|C|2359
5ZLU|1|V|A|2360
5ZLU|1|V|A|2361
5ZLU|1|V|G|2362
5ZLU|1|V|C|2363

Current chains

Chain V

23S ribosomal RNA

Nearby chains

Chain AA

50S ribosomal protein L35

Chain i

50S ribosomal protein L15

Chain t

50S ribosomal protein L27