HL_5ZLU_135

3D structure

PDB id

5ZLU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Ribosome Structure bound to ABC-F protein.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

UUUACCAAAAA

Length

11 nucleotides

Bulged bases

5ZLU|1|V|A|1780, 5ZLU|1|V|C|1781, 5ZLU|1|V|C|1782, 5ZLU|1|V|A|1786

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5ZLU_135 not in the Motif Atlas

Homologous match to HL_4WF9_043

Geometric discrepancy: 0.32

The information below is about HL_4WF9_043

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_01962.2

Basepair signature

cWW-tWH-tWH-F

Number of instances in this motif group

6

Unit IDs

5ZLU|1|V|U|1777
5ZLU|1|V|U|1778
5ZLU|1|V|U|1779
5ZLU|1|V|A|1780
5ZLU|1|V|C|1781
5ZLU|1|V|C|1782
5ZLU|1|V|A|1783
5ZLU|1|V|A|1784
5ZLU|1|V|A|1785
5ZLU|1|V|A|1786
5ZLU|1|V|A|1787

Current chains

Chain V

23S ribosomal RNA

Nearby chains

Chain Z

50S ribosomal protein L2

Chain z

50S ribosomal protein L34